PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00028207-RA_Salv

Common Name

MYB19

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB_related

Protein Properties

Length: 282aa MW: 31544.2 Da PI: 5.1165

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00028207-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.5e-16	14	62	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 +g+WT+eEd +l+++++ +G g+W+ ++ gRt++++k++w+++ SMil_00028207-RA_Salv 14 KGPWTPEEDIKLIQYIQIHGAGNWRILPKNAArlPGRTDNEIKNYWNTH 62 79***********************99998888**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-23	5	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.03E-17	9	73	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.58	9	67	IPR017930	Myb domain
SMART	SM00717	1.3E-14	13	65	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-14	14	62	IPR001005	SANT/Myb domain
CDD	cd00167	1.08E-14	16	63	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MGRSPCCDKD GLKKGPWTPE EDIKLIQYIQ IHGAGNWRIL PKNAARLPGR TDNEIKNYWN 60 THIRKRLLRN GIDPVTHAPR LDLLDLSSIL GSPQLDLSNL LRLQTLLNPQ GLRLALSLLS 120 SSNVENPNIL LHKQLQENHL LELDSHHNQA PIFQPNHFEN VVGQQNPSNP EDSSRPNQPQ 180 SVQNNLGQLS TTSPSSSGQA FQNYCPTNEN IPIDGSNFFY GVCDQMKAVV DLSENSSFDS 240 VLSTPSASTF VNGSTEDEKE SFCSNLLRFE IPESLDQLDY FM

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF059373	0.0	KF059373.1 Salvia miltiorrhiza MYB-related transcription factor (MYB19) mRNA, complete cds.
GenBank	KF059483	0.0	KF059483.1 Salvia miltiorrhiza MYB-related transcription factor (MYB19) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011079047.1	1e-103	transcription factor MYB39-like
TrEMBL	A0A059PRE1	0.0	A0A059PRE1_SALMI; MYB-related transcription factor
STRING	Migut.M00356.1.p	7e-71	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28110.1	4e-38	myb domain protein 41

Publications ? help Back to Top
Li C,Lu S Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza. BMC Genomics, 2014. 15: p. 277 [PMID:24725266]