PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00028236-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 218aa    MW: 24637.2 Da    PI: 7.5026
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00028236-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.6e-1875124255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a++aa + + g
  SMil_00028236-RA_Salv  75 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDAAVRMMCG 124
                            69******9.**********8.....334*********************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.81E-3274134No hitNo description
SMARTSM003806.1E-3575138IPR001471AP2/ERF domain
PROSITE profilePS5103220.45575132IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2075133IPR016177DNA-binding domain
PfamPF008476.8E-1175124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-3275132IPR001471AP2/ERF domain
PRINTSPR003673.8E-117687IPR001471AP2/ERF domain
PRINTSPR003673.8E-1198114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MHGKCLMKCL PKLAVWDIVW DEEGRALCCQ EGDFPTLKKE KPAALLSLSL YIDFTHTLPA  60
QRSASAAAMA RPQQRYRGVR QRHWGSWVSE IRHPLLKTRI WLGTFETAED AARAYDAAVR  120
MMCGARTRTN FAYDASEPSG KLLSATLMAK LQKCHVTSLK MANKAVKQSN EAEHQAARPH  180
DDQNENGMIK SLEDDQIEQM IQELLDYSLI ELSSVMDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1574131462ATERF1
3gcc_A6e-1574131462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022842116.13e-68ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW52e-54ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A4D9BP209e-67A0A4D9BP20_SALSN; Uncharacterized protein
STRINGMigut.I00708.1.p5e-61(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.19e-42ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]