PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00028341-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NAC
Protein Properties Length: 183aa    MW: 21416.7 Da    PI: 8.5885
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00028341-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.64.7e-27281531128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                            lp G+rF+Pt  el+++yL +k++g+kl+ + v++  ++y++eP +Lp +  ++ +++e +fF+   +k+++++ + r+ ++gyWk  
  SMil_00028341-RA_Salv  28 LPFGYRFDPTSVELLQNYLIPKLRGEKLPSDCVMDLDHLYTYEPPQLPfNlFIHCKKDEAFFFTADVRKSSEEESQIRTSSNGYWKVY 115
                            689**************************9555666689*********53555667789***************************98 PP

                    NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               ++v    ge+vg k+ L f+     +g++tdW m eyr 
  SMil_00028341-RA_Salv 116 KDREAVDI-AGEVVGFKTKLLFH---GVHGNRTDWKMIEYRC 153
                            77777766.999**********9...677889********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-3019174IPR003441NAC domain
PROSITE profilePS5100529.28328174IPR003441NAC domain
PfamPF023659.0E-1629152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
LDSFFLLELK LRKRDAMRSS STSRELNLPF GYRFDPTSVE LLQNYLIPKL RGEKLPSDCV  60
MDLDHLYTYE PPQLPFNLFI HCKKDEAFFF TADVRKSSEE ESQIRTSSNG YWKVYKDREA  120
VDIAGEVVGF KTKLLFHGVH GNRTDWKMIE YRCHPTLIPN GVAKRYIVCK IKLKTVNEEK  180
ELS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-20181525139Stress-induced transcription factor NAC1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1513268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.13e-20NAC domain containing protein 86