PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00028358-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LSD

Protein Properties

Length: 195aa MW: 21025.5 Da PI: 8.1613

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00028358-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.9	7.1e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L YPrGA++V+Ca+C+ + SMil_00028358-RA_Salv 7 CAGCRTVLLYPRGATNVCCAICNMI 31 **********************975 PP
2	zf-LSD1	38.8	1.5e-12	57	81	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ rGA sVRC++C+tV SMil_00028358-RA_Salv 57 CGGCRTLLMHARGAASVRCSCCHTV 81 ************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	6.0E-12	4	32	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.0E-11	7	31	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.7E-15	54	84	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.3E-11	57	81	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MQSQIVCAGC RTVLLYPRGA TNVCCAICNM ITPAPPGVDI AGGSLLIPRM EMAQLICGGC 60 RTLLMHARGA ASVRCSCCHT VNLVPGMNLM DHYCVYGLTT VQPRKAYKNA RILEPRRECE 120 KEYTGEYTDM SFLMQNGDTR VPIPVHRPGG ITTSASPPTY LAPSQSHSQT VVVHNPMTVD 180 ESGKLVNNVV VGVTT

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096731.1	3e-60	protein LSD1
Swissprot	Q6ASS2	1e-41	LOL3_ORYSJ; Protein LOL3
TrEMBL	A0A4D8Z361	1e-69	A0A4D8Z361_SALSN; Uncharacterized protein
STRING	XP_009353887.1	7e-57	(Pyrus x bretschneideri)
STRING	EMJ13362	7e-57	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1679	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	8e-39	LSD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]