PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00028594-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 196aa MW: 21415.1 Da PI: 8.0144

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00028594-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00077	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + F ++ L H++ H SMil_00028594-RA_Salv 56 FPCNFCQRKFYSSQALGGHQNAH 78 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.55E-6	54	83	No hit	No description
PROSITE profile	PS50157	11.094	56	83	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	58	78	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MSNQDSSKGS CSLIELSSNS ISLDLSLTFK ASQDAGADSV ASSTSESTPT APPRAFPCNF 60 CQRKFYSSQA LGGHQNAHKR ERSLAKRAIR MGVFSDRYAS LASLPLHGSP FKCLGIKSHA 120 SLHHPLVPPV RPPEHSRITP KFRDAYLFQP IYMEEEEDTH LLWPGSFSAD ASSPVTFLDK 180 TAAFTSESTP DLTLRL

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099925.1	1e-72	zinc finger protein 4-like isoform X2
Refseq	XP_020554558.1	2e-72	zinc finger protein 4-like isoform X1
Refseq	XP_020554559.1	1e-72	zinc finger protein 4-like isoform X2
Refseq	XP_020554560.1	1e-72	zinc finger protein 4-like isoform X2
Refseq	XP_020554561.1	1e-72	zinc finger protein 4-like isoform X2
Refseq	XP_020554562.1	1e-72	zinc finger protein 4-like isoform X2
Swissprot	Q39263	4e-35	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A4D9A2K4	5e-91	A0A4D9A2K4_SALSN; Uncharacterized protein
STRING	POPTR_0017s02490.1	2e-58	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1283	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	4e-34	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]