PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00028713-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 146aa    MW: 16242.5 Da    PI: 7.3687
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00028713-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260144.82.6e-4561051100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lpe++r da++slvyeA+ar rdPvyG+vg+i+ lq+q++
  SMil_00028713-RA_Salv   6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPEQQRGDAVNSLVYEANARGRDPVYGCVGTISYLQNQVS 93 
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            ql+ +la++++e
  SMil_00028713-RA_Salv  94 QLQMQLAVAQAE 105
                            ********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.4945106IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-446103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MGGSSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHK VFGASNVSKM LQELPEQQRG  60
DAVNSLVYEA NARGRDPVYG CVGTISYLQN QVSQLQMQLA VAQAEILCIQ MHQDKSYFLQ  120
NDLLNIPIPN ANSFNKESLY GHDMVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4621077112LOB family transfactor Ramosa2.1
5ly0_B3e-4621077112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021820147.18e-79LOB domain-containing protein 12-like
SwissprotQ8LBW31e-70LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A314UGH62e-77A0A314UGH6_PRUYE; LOB domain-containing protein 12-like
STRINGXP_008233810.11e-77(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.14e-73LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]