PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00028717-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 260aa MW: 29345.4 Da PI: 9.5816

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00028717-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	121.2	9.1e-38	10	151	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkkya...tgk.... 72 lp+GfrFhPtd+elvv+yL++k++g+++++ +++e+d+yk++Pw+Lp v ++++w +kr+ ++ tg+ SMil_00028717-RA_Salv 10 LPAGFRFHPTDDELVVHYLCRKCAGQPISV-PIVAEIDLYKFDPWQLPGelgisvsnyVVVVDKQKWRCTVKRSGISSlrgTGNiptv 96 799*************************.88***********6355554443222244555555555444433332213333 PP NAM 73 ..rknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 r+ r +gyWkatg dk+v + ++ g+kk Lvfy g+apkg+kt+W+mheyrl SMil_00028717-RA_Salv 97 rgRTGR-RGTGYWKATGADKPVGK--PKTLGIKKALVFYAGKAPKGVKTNWIMHEYRL 151 334444.468********98..778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-44	7	177	IPR003441	NAC domain
PROSITE profile	PS51005	45.775	10	177	IPR003441	NAC domain
Pfam	PF02365	3.7E-21	11	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MKGGEQQLNL PAGFRFHPTD DELVVHYLCR KCAGQPISVP IVAEIDLYKF DPWQLPGELG 60 ISVSNYVVVV DKQKWRCTVK RSGISSLRGT GNIPTVRGRT GRRGTGYWKA TGADKPVGKP 120 KTLGIKKALV FYAGKAPKGV KTNWIMHEYR LANVDRSAGK RSNLRLDDWV LCRIYNKKRT 180 LEKHYNVDEK EVQFSDSEDQ KPNVDSVMAA PPRMNEYMHF ETSESMPKWH ATDSSSSEHA 240 PSSSPEFVCD KEVESRSKVE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-60	2	183	7	174	Stress-induced transcription factor NAC1
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Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF760207	0.0	JF760207.1 Salvia miltiorrhiza NAC domain-containing protein 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099683.1	1e-114	NAC domain-containing protein 2-like
Swissprot	Q39013	6e-81	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	G8E9N5	1e-140	G8E9N5_SALMI; NAC domain-containing protein 1
STRING	Migut.L00568.1.p	1e-104	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1239	24	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08790.1	3e-77	NAC family protein

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]