PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00028728-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 417aa    MW: 45856.4 Da    PI: 4.8411
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00028728-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-181461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd +lv +v+++G+g+W+++++t g++R+ k+c++rw +yl
  SMil_00028728-RA_Salv 14 KGSWTPEEDIILVSYVQEHGPGNWRAVPATTGLRRCSKSCRLRWTNYL 61
                           799*******************************************97 PP
2Myb_DNA-binding47.15.5e-1567112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  SMil_00028728-RA_Salv  67 RGSFTLQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112
                            899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-23564IPR009057Homeodomain-like
PROSITE profilePS5129425.433965IPR017930Myb domain
SuperFamilySSF466892.73E-3011108IPR009057Homeodomain-like
SMARTSM007171.5E-131363IPR001005SANT/Myb domain
PfamPF002492.8E-161461IPR001005SANT/Myb domain
CDDcd001673.14E-101661No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2465117IPR009057Homeodomain-like
PROSITE profilePS5129419.62566116IPR017930Myb domain
SMARTSM007172.5E-1566114IPR001005SANT/Myb domain
PfamPF002492.9E-1467112IPR001005SANT/Myb domain
CDDcd001673.53E-1069111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGRPPCCDKI GVKKGSWTPE EDIILVSYVQ EHGPGNWRAV PATTGLRRCS KSCRLRWTNY  60
LRPGIKRGSF TLQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLKKLQ  120
NGSIDQSKAN SSNNNNLISS KSHSISRGQW EKRLQDDITT AKQALHDALS SENTPNGAAA  180
VYASSTENIA RLLKNWVKST PDSAESKCSS NVSTTVDSVC SKEEDMSGAF ESIFGFDNTL  240
ETSNSDEFSR SASPMVVGGE IKQEENSTSS LSMLENWLLD FEVKDYLTNV SFDEDAGFER  300
ALGSHEIEDS AERALGSQKS DEQLSEASVE SRNSSSHEIE DSAELNETII RRSGNVEFNS  360
SEQSPGATGL DSSSSKASQF IRSGVVEKNS TLMLSVEEAA DSGYVPPEYS LNAHAYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-24141164105C-Myb DNA-Binding Domain
1msf_C3e-24141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594030.0KF059403.1 Salvia miltiorrhiza MYB-related transcription factor (MYB49) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098622.11e-149myb-related protein 306
SwissprotQ9SN781e-104MYB94_ARATH; Transcription factor MYB94
TrEMBLA0A059PRE70.0A0A059PRE7_SALMI; MYB-related transcription factor
STRINGMigut.H00921.1.p1e-130(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-101myb domain protein 94
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]
  4. Lee SB,Kim HU,Suh MC
    MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis.
    Plant Cell Physiol., 2016. 57(11): p. 2300-2311
    [PMID:27577115]