PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00028805-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ARR-B
Protein Properties Length: 387aa    MW: 43908.7 Da    PI: 8.4843
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00028805-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.54.4e-21220268554
                G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                            +Wt+eLH++F++a+eqL G+ +  Pk+ile+m+ +gLt+ +v+SHLQk R
  SMil_00028805-RA_Salv 220 EWTQELHTKFMNAIEQL-GEGRCFPKEILEMMNEPGLTRMQVASHLQKCR 268
                            7****************.9*****************************98 PP
2Response_reg44.77.5e-16211251106
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl+vd +   + + ++ le  +y +v+ ++++++a+ +l+  +  +D+++  i+ p+++G++ll++     + +p ++++  ++   a
  SMil_00028805-RA_Salv  21 VLLVDHDAEALINTAKQLEMCQY-KVTFVEHASAAISMLPSGKakFDVVMANINSPDLHGFKLLQHA--VYMCIPLVLMSNDDDAFIA 105
                            89*********************.***************888888*****************99864..4477*************** PP

                            HHHHHTTESEEEESS--HHH CS
           Response_reg  87 lealkaGakdflsKpfdpee 106
                             +al+ Ga  ++ Kp+++e 
  SMil_00028805-RA_Salv 106 MRALEHGAFLYIKKPISMEF 125
                            ***************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.12E-2116141IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.1E-2217144No hitNo description
SMARTSM004481.4E-1219129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011027.7320134IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.3E-1121126IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.17E-1322133No hitNo description
PROSITE profilePS512949.457212272IPR017930Myb domain
SuperFamilySSF466891.08E-14218268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-19219269IPR009057Homeodomain-like
PfamPF002491.0E-7220267IPR001005SANT/Myb domain
TIGRFAMsTIGR015576.3E-19220270IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MWEAGRNNSP LAHAMMHGIH VLLVDHDAEA LINTAKQLEM CQYKVTFVEH ASAAISMLPS  60
GKAKFDVVMA NINSPDLHGF KLLQHAVYMC IPLVLMSNDD DAFIAMRALE HGAFLYIKKP  120
ISMEFLRCLW QHVVREKTRM VRERDMFIAS NNLASVRSVQ FREVTHPRDE NPNPNPNHNM  180
AMKNKGKCKS KGRCRYDDYG EEYDSESHVK GNVRRKICTE WTQELHTKFM NAIEQLGEGR  240
CFPKEILEMM NEPGLTRMQV ASHLQKCRND KWRAPEERKS MSQTSQHATS SGSGSQAKPR  300
RFGSKPLAAN ISYSGQSSDP ETQTPSNGAK MIMNYGTETS SSSKPRHTSD EYFNFLDMDC  360
LTHHFSGAHQ QPGTNNAGRA YNNDRVH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079700.11e-138two-component response regulator ARR14-like
TrEMBLA0A4D9BEQ91e-166A0A4D9BEQ9_SALSN; Two-component response regulator ARR-B family
STRINGMigut.D00936.1.p1e-121(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.13e-45response regulator 1