PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00028864-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 302aa    MW: 33138.1 Da    PI: 7.0476
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00028864-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-192676256
                    AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                           ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a+++l+g+
  SMil_00028864-RA_Salv 26 KFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDKAARQLRGA 76
                           899******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.8E-132675IPR001471AP2/ERF domain
CDDcd000181.42E-292683No hitNo description
SuperFamilySSF541712.75E-202684IPR016177DNA-binding domain
PROSITE profilePS5103220.6662683IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-292683IPR001471AP2/ERF domain
SMARTSM003809.1E-352689IPR001471AP2/ERF domain
PRINTSPR003678.8E-82738IPR001471AP2/ERF domain
PRINTSPR003678.8E-84965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MKQNTSAGGD EGVRVRRKTS SRGHHKFVGV RQRPSGRWVA EIKDSLQKVR LWLGTFDTAE  60
DAARAYDKAA RQLRGANART NFELPQSGPG SAFPENAEPF SFDAMCRTDE ADGLVGALMA  120
KLFNKKSSRV LIQGNAPFAP RLDNFASKGD LRAPPSQATA NRVHVSDRVD GPISDKNDII  180
LNRKTDSVGP ASSLEWLEGE PQLGWQPQMM SHVEEDPFLM SASKGCTWPA MDLAYNCNPL  240
SEVIAINNQG RKDVQVDAAS SSWAPLPPLE GRYGYQDSNN WVAANIGWEL SELHYVVPSI  300
LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1424821271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012851986.11e-100PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A4D8YLP21e-170A0A4D8YLP2_SALSN; EREBP-like factor
STRINGMigut.F00403.1.p2e-99(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118691819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-19related to AP2 11