PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00029061-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 354aa MW: 38818.9 Da PI: 7.9575

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00029061-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.2	3.4e-32	196	251	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ SMil_00029061-RA_Salv 196 KARRCWSPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 251 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.35	193	253	IPR017930	Myb domain
SuperFamily	SSF46689	1.94E-18	194	254	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-28	194	254	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-27	196	251	IPR006447	Myb domain, plants
Pfam	PF00249	6.7E-8	198	249	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MVIKDHNNHS DFSENMQRCH DYIKGLEEER CKIQVFQREL PLCLDLVTQA IETCRQQLSG 60 TTTDHNLHGQ SECSEQTSNH VPVFEEFMPI KRASPDSDGE EHESNKSKIN QTSDSNNDAK 120 ICQKSDWLRS VQLWNQTPDP PSKEDSATKF AASEVKTDGG GALKKERGVA APAPAPASTS 180 STAENGGGNK KESHRKARRC WSPELHRRFL QALQQLGGSH VATPKQIREL MKVDGLTNDE 240 VKSHLQKYRL HTRRPSSSTQ NNNAQTPQFV VVGGLWMPPD YASMATTTAS PGVTFSAPPP 300 PFQEPPSSPK RRQHIKPSSQ SNDGCSYSKG GAQSCSPATS SSTHTTTTAV SPAC

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MVIKDHNNHS DFSENMQRCH DYIKGLEEER CKIQVFQREL PLCLDLVTQA IETCRQQLSG  60
TTTDHNLHGQ SECSEQTSNH VPVFEEFMPI KRASPDSDGE EHESNKSKIN QTSDSNNDAK  120
ICQKSDWLRS VQLWNQTPDP PSKEDSATKF AASEVKTDGG GALKKERGVA APAPAPASTS  180
STAENGGGNK KESHRKARRC WSPELHRRFL QALQQLGGSH VATPKQIREL MKVDGLTNDE  240
VKSHLQKYRL HTRRPSSSTQ NNNAQTPQFV VVGGLWMPPD YASMATTTAS PGVTFSAPPP  300
PFQEPPSSPK RRQHIKPSSQ SNDGCSYSKG GAQSCSPATS SSTHTTTTAV SPAC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-14	196	249	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-14	196	249	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-14	196	249	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-14	196	249	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-14	196	249	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-14	196	249	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-14	196	249	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-14	196	249	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-14	196	249	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-14	196	249	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-14	196	249	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-14	196	249	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077211.1	1e-147	myb family transcription factor EFM-like
Swissprot	Q9FPE8	2e-93	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A4D8ZB00	1e-173	A0A4D8ZB00_SALSN; Two-component response regulator ARR-B family
STRING	VIT_01s0011g03110.t01	1e-125	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5219	24	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	9e-93	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]