PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00029062-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 230aa    MW: 26761.3 Da    PI: 7.1156
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00029062-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.12.1e-36261162101
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y+i++d++++++isw+ +g++f+v+++ efak++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g
  SMil_00029062-RA_Salv  26 FLTKTYQIVDDRAVDDIISWNVDGSAFIVWNPAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNECFRRG 104
                            9*****************************************************************99.........*********** PP

                            XXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkk 101
                            +++ll++i+r++
  SMil_00029062-RA_Salv 105 ETHLLRDIQRRR 116
                            **********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.2E-5822115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-3423115IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-3824115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.5E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MASPSVDRKG GESWGEDMTR LLPTPFLTKT YQIVDDRAVD DIISWNVDGS AFIVWNPAEF  60
AKDLLPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFSNEC FRRGETHLLR DIQRRRMAAK  120
SEDQAVGSPA ELIDENERLR QQNVQLNKEL RHMKNLCSNI YALMSNYAGS EEHARARACK  180
LYMTENVKPL ELLPMTRFCQ EMTRKGRETE ATSAEHHMDL ELRLPGDARD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-262611529129Heat shock factor protein 1
5d5v_B3e-262611529129Heat shock factor protein 1
5d5v_D3e-262611529129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076201.11e-103heat stress transcription factor B-2a
RefseqXP_011076202.11e-103heat stress transcription factor B-2a
SwissprotQ9SCW41e-73HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A2Z4K5C01e-108A0A2Z4K5C0_TECGR; HSF2 protein
TrEMBLA0A4D8Z1811e-108A0A4D8Z181_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.F00357.1.p1e-96(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-76heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]