PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00029246-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 249aa    MW: 27459 Da    PI: 7.5092
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00029246-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.2e-19107157255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +++GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka+++a+ +l+g
  SMil_00029246-RA_Salv 107 HFRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTAMEAAKAYDRAAFQLRG 157
                            69*******.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-32106166IPR001471AP2/ERF domain
PfamPF008475.6E-14107157IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23107167IPR016177DNA-binding domain
PROSITE profilePS5103223.788107165IPR001471AP2/ERF domain
SMARTSM003805.0E-37107171IPR001471AP2/ERF domain
CDDcd000181.42E-29107165No hitNo description
PRINTSPR003672.5E-10108119IPR001471AP2/ERF domain
PRINTSPR003672.5E-10131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSNTLIMASP DETSALDLIR QHLLDDFAFA ETYCSSQSQI SRTSSSTSSN LSDLTTGDCF  60
EFETKPHIAM REKAKPALNI AIPKVTNKAA LIHLAGAAVE DSGDRRHFRG VRQRPWGKFA  120
AEIRDPNRKG TRVWLGTFDT AMEAAKAYDR AAFQLRGSKA ILNFPLEIGS MDQSAVPQIE  180
AVVCRKRRRD GEGEERERKE VKTESSELTA AVPLTPSSWT AVWDGGEGKG IFEVPPLSPY  240
PQMSSVIRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-30106170468ATERF1
3gcc_A3e-30106170468ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184188RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101098.13e-87ethylene-responsive transcription factor 5
SwissprotQ9LW484e-78ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBLA0A4D9C6254e-93A0A4D9C625_SALSN; EREBP-like factor
STRINGMigut.F00527.1.p4e-84(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-53ERF family protein