PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00029259-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HD-ZIP

Protein Properties

Length: 239aa MW: 27415.3 Da PI: 4.7253

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00029259-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.7	2.3e-19	70	123	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ F+ ++++ +++ eLAkklgL+ rqV +WFqNrRa+ k SMil_00029259-RA_Salv 70 KKRRLTAEQVQFLEKSFAVENKLEPDRKNELAKKLGLQPRQVAIWFQNRRARSK 123 56789***********************************************99 PP
2	HD-ZIP_I/II	124.6	4.4e-40	69	157	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrl++eqv++LE+sF e+kLep+rK+ela++Lglqprqva+WFqnrRAR ktk lE++y +Lk++yd+lk++ ++L +++e+L+ SMil_00029259-RA_Salv 69 EKKRRLTAEQVQFLEKSFAVENKLEPDRKNELAKKLGLQPRQVAIWFQNRRARSKTKVLEREYGSLKSCYDKLKADYDTLFSDNEKLK 156 69*************************************************************************************9 PP HD-ZIP_I/II 89 e 89 + SMil_00029259-RA_Salv 157 N 157 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.78E-19	54	125	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.508	65	125	IPR001356	Homeobox domain
SMART	SM00389	1.2E-18	68	129	IPR001356	Homeobox domain
Pfam	PF00046	1.2E-16	70	123	IPR001356	Homeobox domain
CDD	cd00086	1.53E-16	70	125	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.7E-19	71	131	IPR009057	Homeodomain-like
PRINTS	PR00031	1.6E-6	96	105	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	100	123	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.6E-6	105	121	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.9E-12	125	158	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MKSSPVFDVA DALLNDERIP SDALWIPNSS PSLHAMVSFE QSRGERSNRS RQSDCDDGDS 60 DSCFHHPPEK KRRLTAEQVQ FLEKSFAVEN KLEPDRKNEL AKKLGLQPRQ VAIWFQNRRA 120 RSKTKVLERE YGSLKSCYDK LKADYDTLFS DNEKLKNEKG NDEISPLDAA PCKQEDASSY 180 SSHVLEASDF EQGDEDDECL VQRLCLPKLE AEYYDDHLQP NSCNLGFPVQ NQGTWFWQC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071034.1	1e-80	homeobox-leucine zipper protein HAT5-like
TrEMBL	A0A4D9APJ0	1e-125	A0A4D9APJ0_SALSN; Homeobox-leucine zipper protein
STRING	Migut.L01347.1.p	3e-63	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA825	24	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	5e-40	homeobox 1