PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00029531-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 198aa    MW: 22725.9 Da    PI: 4.2151
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00029531-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-192879155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           ++++GVr+++ +grW+AeIrdp     + +r++lg+++taeeAa  ++aa+ +++g
  SMil_00029531-RA_Salv 28 KKFRGVRRRP-WGRWAAEIRDPAR---HgARVWLGTYDTAEEAAMIYDAAAIQIRG 79
                           59********.**********943...24************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381233.6E-331192IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000188.95E-302886No hitNo description
Gene3DG3DSA:3.30.730.105.7E-302987IPR001471AP2/ERF domain
PROSITE profilePS5103224.5132987IPR001471AP2/ERF domain
PfamPF008473.3E-142979IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-232987IPR016177DNA-binding domain
SMARTSM003805.0E-342993IPR001471AP2/ERF domain
PRINTSPR003672.5E-103041IPR001471AP2/ERF domain
PRINTSPR003672.5E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MKSDAEEEEE KKKKRRPPPA TETERREKKF RGVRRRPWGR WAAEIRDPAR HGARVWLGTY  60
DTAEEAAMIY DAAAIQIRGA NAVTNFSPPS TDTAAPAEDY GDACEFVRFD FGDSKHDDAK  120
LSCSRFESVD PKEEDLFSSD DFLSLGDEYL LNDDLDFRSQ LNCDEIRLRE QVLDDDFSCV  180
DIDLGDDFAW DLNELLAW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-222886462ATERF1
3gcc_A2e-222886462ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1916EKKKKRRP
21015KKKKRR
31115KKKRR
41116KKKRRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093108.14e-36pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A4D9BAW02e-45A0A4D9BAW0_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-13cytokinin response factor 1