PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00029708-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HB-other

Protein Properties

Length: 119aa MW: 13702.3 Da PI: 7.0762

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00029708-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.5	1.5e-10	66	105	1	40
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS- CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLt 40 r+k +++t+ q++eLe++F+ n++p++++r eL k+lgL SMil_00029708-RA_Salv 66 RKKYHRHTAFQIQELEACFKDNPHPDEKARLELGKRLGLR 105 7999**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.9E-13	51	105	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.03E-9	52	105	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.556	63	119	IPR001356	Homeobox domain
Pfam	PF00046	3.8E-8	66	105	IPR001356	Homeobox domain
CDD	cd00086	5.10E-8	66	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MFMFMFLWRQ PKMENLGEMG LLGESHDSGL IGRTREDELE SRSGSDNFEG ASGDDENATH 60 NKSSKRKKYH RHTAFQIQEL EACFKDNPHP DEKARLELGK RLGLRAGRSN FGFRTEEPK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076208.1	4e-52	homeobox-leucine zipper protein ANTHOCYANINLESS 2
Swissprot	Q0WV12	9e-25	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A4D9BN74	1e-50	A0A4D9BN74_SALSN; Homeobox-leucine zipper protein
STRING	XP_002510822.1	2e-37	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	4e-27	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]