PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00029750-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 183aa    MW: 20206.6 Da    PI: 9.5662
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00029750-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.2e-2165115255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+++AeIrdps+ng  +r++lg++ taeeAa a+++a+  ++g
  SMil_00029750-RA_Salv  65 HYRGVRQRP-WGKFAAEIRDPSKNG--ARVWLGTYETAEEAALAYDQAAYTMRG 115
                            7********.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.61E-2864123No hitNo description
PROSITE profilePS5103223.98665123IPR001471AP2/ERF domain
PfamPF008471.1E-1565115IPR001471AP2/ERF domain
SMARTSM003805.1E-3965129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3265123IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2365125IPR016177DNA-binding domain
PRINTSPR003673.5E-116677IPR001471AP2/ERF domain
PRINTSPR003673.5E-1189105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MTFQNDDHYE ADLALLDTIR RYLLDDMGPL DATVKPEPEP EPEPQLSFLS FQAVAAQPAA  60
PRGAHYRGVR QRPWGKFAAE IRDPSKNGAR VWLGTYETAE EAALAYDQAA YTMRGSRAML  120
NFPLRVNSGE PPPVRITSKR STASSSSDSS GSPQKRKTAA AADGLKKKRT SSAISQERFP  180
IFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-4062130270ATERF1
3gcc_A3e-4062130270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154168KRKTAAAADGLKKKR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081402.21e-61ethylene-responsive transcription factor 1A-like
SwissprotO803374e-49EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A4D9BCU62e-60A0A4D9BCU6_SALSN; EREBP-like factor
STRINGSolyc08g007230.1.13e-52(Solanum lycopersicum)
STRINGPGSC0003DMT4000058363e-52(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-33ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]