PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00029866-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 197aa    MW: 21093.8 Da    PI: 9.913
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00029866-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-1169113554
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            h+++Er RR+ri +++  L+el+P+a      + +Ka++L + ++Y+k L
  SMil_00029866-RA_Salv  69 HSIAERLRRERIAERMKALQELVPNA-----NRTDKASMLDEIIDYVKFL 113
                            99***********************8.....69***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.67E-1162118No hitNo description
SuperFamilySSF474591.7E-1662123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.1364113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1566122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-869113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-1270119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MQENDASIKA LFNGFTGSLG QTTNQDQHFP HSQTDSFGVS ASAAASQPSA AGQPRQRVRA  60
RRGQATDPHS IAERLRRERI AERMKALQEL VPNANRTDKA SMLDEIIDYV KFLRLQVKVL  120
STSRLGGAAA VAPLLGDASS QGKKGEKEGM ATAEQKVAKL LEEDMGSAMQ YLQGKGLCLM  180
PISLATSISS SSTQTST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378RLRRER
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574520.0KP257452.1 Salvia miltiorrhiza clone 19 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844124.11e-100PREDICTED: transcription factor bHLH66-like isoform X2
SwissprotQ8S3D52e-70BH069_ARATH; Transcription factor bHLH69
TrEMBLA0A0H3YB211e-141A0A0H3YB21_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.K00336.1.p7e-99(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37592445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-46LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]