PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00030018-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 175aa MW: 20301 Da PI: 9.4937

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00030018-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	133.3	1.7e-41	24	148	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 ppGfrF Ptd++l+veyL+kk+++k++++ i+e+ i +v+P+dL ++ k +++ewyfF++rd ky++g+r+ ra+++gyWkatg SMil_00030018-RA_Salv 24 PPGFRFLPTDKQLIVEYLQKKIDNKPIPV--QINETFIKHVNPRDLTaNNPKLGDNEWYFFTPRDWKYSNGERPDRAADTGYWKATGA 109 9************************99..69*********956777799***************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+v++ + g ++tL fy+g+ p+g+kt W +he+r+ SMil_00030018-RA_Salv 110 DKPVIV-GAVILGFRRTLEFYEGKPPNGQKTVWKIHEFRV 148 **.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-44	15	164	IPR003441	NAC domain
PROSITE profile	PS51005	43.056	23	169	IPR003441	NAC domain
Pfam	PF02365	4.3E-22	24	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MDHQETQSED QHISAAVPGR NRYPPGFRFL PTDKQLIVEY LQKKIDNKPI PVQINETFIK 60 HVNPRDLTAN NPKLGDNEWY FFTPRDWKYS NGERPDRAAD TGYWKATGAD KPVIVGAVIL 120 GFRRTLEFYE GKPPNGQKTV WKIHEFRVNG VARNKTSADD MRVCLHLIHI FYAYV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-36	24	148	16	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:20005003}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015057729.1	3e-49	NAC transcription factor 32-like
Swissprot	A0SPJ8	1e-39	NAM1_HORVV; NAC transcription factor NAM-1
TrEMBL	K4D9G4	9e-48	K4D9G4_SOLLC; Uncharacterized protein
STRING	Solyc11g065540.1.1	2e-48	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	2e-42	NAC domain containing protein 32

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321] Jamar C, et al. NAM-1gene polymorphism and grain protein content in Hordeum. J. Plant Physiol., 2010. 167(6): p. 497-501 [PMID:20005003]