PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00030087-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NAC
Protein Properties Length: 159aa    MW: 18682.4 Da    PI: 10.1027
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00030087-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.14e-54111391128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                            lp+G+rF+Ptdeel+++yL+ k+++++ e+ +vi+e+d++k+ePwdLp  + v+++++ew+fF+++d+ky++g+r nrat++gyWkat
  SMil_00030087-RA_Salv  11 LPVGYRFRPTDEELIDHYLRLKINRRDKEV-SVIREIDVCKWEPWDLPdlSVVESTDNEWFFFCPKDRKYQNGQRLNRATEKGYWKAT 97 
                            799************************999.99**************96447888999****************************** PP

                    NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            gkd++++++kg ++g+kktLvfy grap+g++t+Wv+heyr+
  SMil_00030087-RA_Salv  98 GKDRNITTRKGVKIGMKKTLVFYMGRAPDGKRTNWVIHEYRA 139
                            ****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-563145IPR003441NAC domain
PROSITE profilePS5100551.59111159IPR003441NAC domain
PfamPF023654.8E-2812138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
LSMAVLPVKA LPVGYRFRPT DEELIDHYLR LKINRRDKEV SVIREIDVCK WEPWDLPDLS  60
VVESTDNEWF FFCPKDRKYQ NGQRLNRATE KGYWKATGKD RNITTRKGVK IGMKKTLVFY  120
MGRAPDGKRT NWVIHEYRAT DKSLDGTHPG QVRTSFYAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-431014316146NO APICAL MERISTEM PROTEIN
1ut4_B3e-431014316146NO APICAL MERISTEM PROTEIN
1ut7_A3e-431014316146NO APICAL MERISTEM PROTEIN
1ut7_B3e-431014316146NO APICAL MERISTEM PROTEIN
4dul_A3e-431014316146NAC domain-containing protein 19
4dul_B3e-431014316146NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075874.11e-104NAC domain-containing protein 62
SwissprotB5X5701e-75NAC14_ARATH; NAC domain-containing protein 14
TrEMBLA0A2G9G0M41e-100A0A2G9G0M4_9LAMI; Uncharacterized protein
STRINGMigut.F00136.1.p1e-100(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.14e-78NAC 014