PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00030164-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 181aa    MW: 20518.5 Da    PI: 4.2818
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00030164-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.2e-0824462346
                           -HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                            W++Ia++++ gRt++++k++w++
  SMil_00030164-RA_Salv 24 KWSAIAAELP-GRTDNDIKNFWHT 46
                           4*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-8351IPR009057Homeodomain-like
PROSITE profilePS5129411.337952IPR017930Myb domain
SMARTSM007170.00341350IPR001005SANT/Myb domain
CDDcd001671.49E-71646No hitNo description
Gene3DG3DSA:1.10.10.601.8E-102347IPR009057Homeodomain-like
PfamPF002492.3E-62446IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVRSPCFDSN GMKKGAWSED EDSKWSAIAA ELPGRTDNDI KNFWHTRVAR RRKPNSAASS  60
SSSSSYHKLL EMAPNLHQND ATKIQESMLA FECDTNSSAT QSQFDLWDDE FPAEFPNYAD  120
FPPLILEEEF CYPQFYYKDW FADEDHSIMF NAVGGSIWDE SFALTTSDSQ PQSRVCVPLG  180
G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.16e-11myb domain protein 68