PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00030384-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 145aa    MW: 16721.9 Da    PI: 5.8565
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00030384-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.8e-20250856
                           -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           ++eqle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k
  SMil_00030384-RA_Salv  2 STEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 50
                           789*********************************************9 PP
2HD-ZIP_I/II115.72.8e-37187692
            HD-ZIP_I/II  6 lskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
                           ls+eq+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k kqlE+ y+aLk+++da+++e+++L++ev +Lr+ lk
  SMil_00030384-RA_Salv  1 LSTEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKGKQLERLYDALKQEFDAVSREKHKLHQEVLALRAILK 87
                           799********************************************************************************8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.2152IPR001356Homeobox domain
CDDcd000862.88E-15153No hitNo description
SMARTSM003891.0E-13156IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-21259IPR009057Homeodomain-like
SuperFamilySSF466891.33E-17253IPR009057Homeodomain-like
PfamPF000465.7E-17250IPR001356Homeobox domain
PRINTSPR000313.5E-62332IPR000047Helix-turn-helix motif
PROSITE patternPS0002702750IPR017970Homeobox, conserved site
PRINTSPR000313.5E-63248IPR000047Helix-turn-helix motif
PfamPF021836.2E-85286IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
LSTEQLESLE NSFQEEIKLD PDRKMKLAKE LGLQPRQIAV WFQNRRARWK GKQLERLYDA  60
LKQEFDAVSR EKHKLHQEVL ALRAILKDQV AKKQVSTDVS GEETVESTSI PSSEKGRGEG  120
NNQMGECNYV LNVEDYSPLI MTPYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14452RRARWKGKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094442.11e-80putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR01e-45ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A4D8YZW54e-89A0A4D8YZW5_SALSN; Homeobox-leucine zipper protein
TrEMBLA0A4D9C6204e-89A0A4D9C620_SALSN; Homeobox-leucine zipper protein
STRINGMigut.J00491.1.p2e-78(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.14e-48homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]