PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00030400-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 160aa    MW: 18137.4 Da    PI: 5.7232
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00030400-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind32.62.1e-102364243
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH CS
           HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk 43
                           Fl+k+ye ++d++++ ++sws+ +nsfvv+d+++f+ ++Lp+
  SMil_00030400-RA_Salv 23 FLSKTYEFVDDPRTDPIVSWSRGNNSFVVWDPQNFSINLLPR 64
                           9************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-121464IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-181992IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-281992IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-72364IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.8E-56592IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MYSDAMEIPQ PNEALHENAP PPFLSKTYEF VDDPRTDPIV SWSRGNNSFV VWDPQNFSIN  60
LLPRKVDPDK WEFANEGFLK GQRHLLKTIK RRKQTGTTNI AQGATNCQGF ESCVEVGSFG  120
LDGEIERLKR DKSVLMMELV KLRQQQQQTS SHIQGDGGEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18591LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552814.11e-67heat stress transcription factor A-2c
SwissprotQ9LUH87e-58HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A4D8YYT51e-66A0A4D8YYT5_SALSN; Heat shock transcription factor, other eukaryote
STRINGXP_009797496.14e-65(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.18e-57heat shock transcription factor A6B