PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00030409-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 202aa    MW: 22874.2 Da    PI: 10.3192
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00030409-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55.1e-1874165198
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                            ffkvl  s+v   ++l+lp +f++++++  + +++l++ d sgr+W+v++  ++ +++ + +t+GW++F+++  Lk g+f+vF+l  +
  SMil_00030409-RA_Salv  74 FFKVL--SNVDYIKLLRLPPHFLRKYELTLPANVKLRVDD-SGRRWNVRV--ERMDDGlFCFTNGWEKFAEDAALKFGEFLVFSLLAK 156
                            99***..556666669**********98877777777555.*********..7777777*************************9874 PP

                            SEE..EEEEE- CS
                     B3  88 sefelvvkvfr 98 
                            se  l+v +++
  SMil_00030409-RA_Salv 157 SE--LKVDIYE 165
                            44..5888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-2268169IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-2269169IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.70472167IPR003340B3 DNA binding domain
CDDcd100173.17E-1872164No hitNo description
PfamPF023622.2E-1574165IPR003340B3 DNA binding domain
SMARTSM010199.7E-1774167IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MALGIHASAR PFKSLHPSPT THHSFSYNSH FSLKPKAQRQ QPPTSSPATA KKVLEEEKKS  60
PNPMSGRSNE TPSFFKVLSN VDYIKLLRLP PHFLRKYELT LPANVKLRVD DSGRRWNVRV  120
ERMDDGLFCF TNGWEKFAED AALKFGEFLV FSLLAKSELK VDIYETSCCK REIPLLQLNA  180
QDADESGVKR GIRVRPSSGK RG
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-14B3 family protein