PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0001s0790.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 312aa    MW: 34994 Da    PI: 7.7614
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0001s0790.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-082873346
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                            +WT+eE +++ +a +++ ++   +W ++a+ ++ g+t  +++  ++ 
  SapurV1A.0001s0790.1.p 28 KWTPEENKQFENALALYDKDtpdRWLKVAALIP-GKTVGDVIKQYRE 73
                            7********************************.******9999986 PP
2Myb_DNA-binding44.63.4e-14135179347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT+eE+ +++ + +++G+g+W+ I+r   ++Rt+ q+ s+ qky
  SapurV1A.0001s0790.1.p 135 PWTEEEHRQFLLGLQKYGKGDWRNISRNYVTTRTPTQVASHAQKY 179
                             8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.4342479IPR017884SANT domain
SMARTSM007172.9E-92577IPR001005SANT/Myb domain
SuperFamilySSF466892.15E-112881IPR009057Homeodomain-like
CDDcd001675.75E-82874No hitNo description
Gene3DG3DSA:1.10.10.600.0012874IPR009057Homeodomain-like
PfamPF002492.3E-72873IPR001005SANT/Myb domain
PROSITE profilePS5129419.42128184IPR017930Myb domain
SuperFamilySSF466893.66E-17130184IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-17131183IPR006447Myb domain, plants
SMARTSM007171.8E-12132182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-12132177IPR009057Homeodomain-like
PfamPF002496.1E-12135179IPR001005SANT/Myb domain
CDDcd001678.08E-11135179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MNRGIGILYP ASYLQNSNWL FEEGGGAKWT PEENKQFENA LALYDKDTPD RWLKVAALIP  60
GKTVGDVIKQ YRELEEDVSD IEAGLIPIPG YNSDSFTLEW VGDQGYDGLK QYYSPGGKRA  120
TATRPSELER KKGVPWTEEE HRQFLLGLQK YGKGDWRNIS RNYVTTRTPT QVASHAQKYY  180
IRQSTGGKDK RRSSIHDITT FNLPDAKSPS PENKRLSSPD HSTTTMQSQA QQKTAGMVKG  240
LFDWKKQDEG TASVYNPAND NLLTTPFCGI SSHGPKMQEQ NLLGGTLPGY QFGPYNFIFQ  300
MQSMQHQEGH G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-162493675RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0001s0790.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308211.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-109DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLB9HCK20.0B9HCK2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s09860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-121MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]