PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0001s2210.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 326aa    MW: 35664.4 Da    PI: 9.6544
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0001s2210.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH391.4e-12427226
                            -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                            k e+Cr+f+r G C+yGdrCkF H+
  SapurV1A.0001s2210.2.p  4 KKEPCRNFQR-GSCQYGDRCKFLHV 27
                            99********.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010317.619229IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-10327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.55E-6330IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-7328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-9426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MYKKKEPCRN FQRGSCQYGD RCKFLHVTPQ QQPKSSNNPF GFGNRQTPNN NNNNSFGFAN  60
RQQQQQQQQR PNSPFGSASN NSATNRPQQF KPFENKWSRG AAAPSSRQRP DNQPANHECT  120
DPDSCKRLIA EDFEHERPLW KLTCYGHLKS GPCDIIGDVS YEELRAAAYD DYKRGLSLQS  180
IVEKERNLHN SKLIEFNNLL RDPNTASSKP APAGQSPFFG ATANATPATA QNTTPPSVSS  240
FGQLGTSLNM GFGTRSATPS NNAFGQPNQP LTAFGVSLPA PSNNVFGQLN PPSNSSQTAL  300
LAANFLNRHL EIPSPPILQA LATVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0001s2210.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308140.21e-176zinc finger CCCH domain-containing protein 46 isoform X1
TrEMBLB9HBD41e-174B9HBD4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s08100.11e-175(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-66C3H family protein