PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0001s2530.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 1019aa    MW: 112375 Da    PI: 7.4718
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0001s2530.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.68.7e-22135236199
                             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                             f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ F + ++L +gD+v+
  SapurV1A.0001s2530.3.p 135 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFISGKRLFAGDSVL 220
                             99*****************************9445444.38********************************************** PP

                             EEE-SSSEE..EEEEE-S CS
                      B3  82 Fkldgrsefelvvkvfrk 99 
                             F   ++++++l+++++r+
  SapurV1A.0001s2530.3.p 221 FI--RDEKQQLLLGIRRA 236
                             **..5688889****997 PP
2Auxin_resp120.71.1e-39261344183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  SapurV1A.0001s2530.3.p 261 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 344
                             79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-43124264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-41126250IPR015300DNA-binding pseudobarrel domain
CDDcd100175.46E-18134226No hitNo description
PROSITE profilePS5086311.758135237IPR003340B3 DNA binding domain
SMARTSM010195.2E-22135237IPR003340B3 DNA binding domain
PfamPF023627.2E-20135236IPR003340B3 DNA binding domain
PfamPF065076.8E-35261344IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1019 aa     Download sequence    Send to blast
MKSPAAGAGG TAAAATATNG EGVEKKSINP ELWQACAGPL VNLPAAGTHV VYFPQGHSEQ  60
VAASMKKDVD AQIPNYPNLP SKLLCLLHNV TLHADPETDE VYAQMTLQPV SSFDKDALLR  120
SDLALKSNKP QTEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP PAQELVARDL  180
HDNVWTFRHI YRGQPKRHLL TTGWSLFISG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP  240
TNLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAS PSEFVIPLAK YYKAVYSNQI  300
SLGMRFRMMF ETEESGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERRNRVS  360
IWEIEPVTAP FFICPPPFFR SKRPRQPGMP DDDSSDLDSL LKRTMPWLGD DICMKDPQAP  420
PGLSLVQWMN MQQNPSLAHS MQPNYMQSLS GSVLQNLPGA DLSRQLGMSS PQMPQPNNVQ  480
LNAQRLPQQA QQLDQLPKLQ SSLIPLGSII QPHQQMGDIT QQSRQNLMAQ TLPSSQVQAQ  540
LLQPQTLAQT NNILQQQPSI QSHQLLRNLP QTLHQQQQNQ QQYVMGQNQQ QSLMQSQLSD  600
HVNQHMQISE NQIQLQLLQK LQQQQQSLLA QQSAMQQTGQ LGQLQDSQRQ FLDASQNFSR  660
SMAPSQMLET AQTAPSSLPQ PNTIPQQLTK NNNQNNVRFS HPHQQPKLQQ QQTGILSLSE  720
MACHMGLPPS SMTNQLSTAG SSILTAGAGQ GQSGITDDVP SCSTSPSTNN CPNMVQQMVN  780
SRPHRSTAMG EDMAQSAATL LNPSTLETVS SNGNLVKDLL QKSEVKPSMN ISKNQNPGYY  840
APQTYLNGVA AQTDYLDTSS TTTSNCLSQN DVHLQQNNIS LSYNPQPMLL RATSHDGELQ  900
ADLRNNIPYG TNIDSQLVMP MSSDHLLTKG MAGLGKDFSN NLSSSGVLPS CENSKDPQQD  960
LSSSMVSQSF GVPDMPFNSI NSAINDNSFL NRGAWVPPQQ QFQRMRTYTK VCCLSIQC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1732236545388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0001s2530.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381166.10.0auxin response factor 19
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLU5G6140.0U5G614_POPTR; Auxin response factor
STRINGPOPTR_0006s07740.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19