PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0002s0250.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 410aa    MW: 46904 Da    PI: 4.385
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0002s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.61.6e-13175259286
                trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             W ++e+ +L++a  ++  + ++++l+   W+ev++k++e+ + er+ +qC+++++ l+k+yk +k  + +   +  s+++yf++l+
  SapurV1A.0002s0250.1.p 175 WNERETFVLLDAWGDKFLQRGKKSLRCDEWQEVAEKVSEKSMiERTDTQCRNRLDTLKKKYKIEKIKSAEA-GGGASKWVYFKKLD 259
                             *************************************888777*******************998888875.677779******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-4137145IPR009057Homeodomain-like
PfamPF138371.5E-20174259No hitNo description
Gene3DG3DSA:1.10.10.603.9E-4200244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDTTEDDARY PPNPYGENNR QSYGSNHHKL LVGNAVYLRE VDNQYSIDED EDGDEEEEDE  60
HELEVDDGEN YQKNGIHYVG KDVDEEDEGV DEEDEGDDED DNQKCNRRID EDEDGNEKYY  120
RRIDDDDDIE RHPKKRKLKS LVSSYEFAPR VPAPPVAAPA GSKPSVGGRN PLTDWNERET  180
FVLLDAWGDK FLQRGKKSLR CDEWQEVAEK VSEKSMIERT DTQCRNRLDT LKKKYKIEKI  240
KSAEAGGGAS KWVYFKKLDI LMSTSAQQGG LSCGLDSGEY VFMNSKAYSN HANRLDEMRD  300
SPGNSESARD EDDSDGLPPK KRSLGRESRN CNEQSSFGLL ADSIQKFSEI YEKIESSKRQ  360
QMLELEKMKM DFQRDLETQK RQIIERAKAE IAKIHQDSED EDTISANSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0002s0250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2247870.0CU224787.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453662.10.0trihelix transcription factor ASIL1
TrEMBLA0A2K2B2140.0A0A2K2B214_POPTR; Uncharacterized protein
STRINGPOPTR_0003s05470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.19e-63Trihelix family protein