PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0002s0820.7.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 535aa    MW: 58868.7 Da    PI: 9.299
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0002s0820.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07419467348
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                             +WT  E  +lv++v  +G g+W+ I r        Rt  ++k++w+++l
  SapurV1A.0002s0820.7.p 419 AWTLCEVMKLVEGVSSYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 467
                             7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.545412471IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-12414474IPR009057Homeodomain-like
SMARTSM007172.9E-7416469IPR001005SANT/Myb domain
SuperFamilySSF466892.18E-15418477IPR009057Homeodomain-like
CDDcd116605.94E-18418468No hitNo description
PfamPF002491.7E-5419467IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MHFVADPGQT VGCISNEGSS TGIAQLESLE GLLQSRNKEA GSDKLNARLE ETVPSLAPSL  60
SESHFNQSGS AGECSHSSDN LVAAGSTSSA VTTKPDFSKL KGEICLDNLS IKELHETFKA  120
TFGRETTVKD KQWLKRRISM GLTNSCDVSV TSFIIKDNKL VKKENEEISN CMDGSYAEDQ  180
PIGNQKDLLT SLNQLDYHQV VPEKRLENPS LDDNSGSDDH QTEQRAAKRV RKPTKRYIEE  240
LSEVEPKESN GRLMNLAKNS GHGLISLKSH VRPVRNVILG GRTVVTRLDS LGGYGIEVPC  300
VSRVRRSRPR KNFMALLKFN PSGMGTEAML VKKVHGDHSF PPDDEKESRV FLKANSTPEH  360
VHHQFIGVPE KDKQFSVMSA IGLGHNMELK CMNSSGDSDD NVVTVPTPKG GIRRKHHRAW  420
TLCEVMKLVE GVSSYGAGRW SEIKRLAFAS YSYRTSVDLK DKWRNLLKAS LAQTPQDNGM  480
NSRKNTGAMP IPAPILLKVR ELAEMQAQAL PNLSSTKIAG SPRKNVHEKQ TGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304310RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0002s0820.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453600.10.0uncharacterized protein LOC7475702 isoform X3
TrEMBLA0A2K2B2H00.0A0A2K2B2H0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06240.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-110TRF-like 6