PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0003s0430.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 340aa    MW: 38329.7 Da    PI: 8.4757
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0003s0430.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12147198155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  SapurV1A.0003s0430.2.p 147 QRMNHIAVERNRRRLMNDHLNSLRSLMPPS---YVQRGDQASIIGGAIDFVKELE 198
                             79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.96E-12145202No hitNo description
SuperFamilySSF474591.11E-16146215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.212146197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-13147212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10147198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-10152203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MPFLQMLQTL ETPPTFPFKE PSFQTLLRLQ HLKKPWNMNN YYMPETECQV QPPELESCVT  60
HDIADLHSPV KSETKELPNP DSNSCIEGVS PEPAEPYSRS SVPWATQPQA VPDIKTQFSK  120
STTIITRERR KRKRKRPTKN NEDIESQRMN HIAVERNRRR LMNDHLNSLR SLMPPSYVQR  180
GDQASIIGGA IDFVKELEQL LQSLEAQKRM RKMEAGSTIG ISSNQYCTSP PQSDILAEKG  240
GNCEEKRTVK KKSEAAEIEV TAVQNHVSLK MKCQRSPGQL LRAIVALEEL SLTVLHLNIS  300
SSQATILYSF NLKLENECKL GSTDEVAAAV HQIFSSFKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127136ERRKRKRKRP
2128133RRKRKR
3128134RRKRKRK
4129134RKRKRK
5129135RKRKRKR
6147158RMNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0003s0430.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450771.10.0transcription factor bHLH70 isoform X3
TrEMBLA0A2K2BKL10.0A0A2K2BKL1_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10190.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.14e-76bHLH family protein