PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0003s0880.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Dof
Protein Properties Length: 277aa    MW: 30402.6 Da    PI: 9.1418
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0003s0880.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.51.7e-393595262
                  zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                            ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s+
  SapurV1A.0003s0880.2.p 35 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRST 95
                            6899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-233484IPR003851Zinc finger, Dof-type
PfamPF027012.0E-333793IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1993993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDAASWPRDI KLAKPMEEMS SNTCGRPVLE RKARPQEQLN CPRCNSTNTK FCYYNNYSLT  60
QPRYFCKTCR RYWTEGGSLR NVPVGGGSRK NKRSTSSSAA SSKLPDLNPP NLSHFSSHNP  120
NRSGHEGQDL NLAFPAMQDS QGISHYTEVA KAENNNHNQH SSYSSPYTTS SPISALELLR  180
SGIASRDLNS FIPTPMPDSN TLYSSGGFPL QELKPTLSFS LDGLGSRYGV QQHNGRLLFP  240
FGEHKQLSST AEADQNKGQG TSSTGYWNGM FGGGSW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0003s0880.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451838.11e-176dof zinc finger protein DOF2.5 isoform X4
SwissprotQ433853e-71DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A3N7G3M31e-155A0A3N7G3M3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s17490.11e-143(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.45e-67Dof family protein