PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0003s0880.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Dof
Protein Properties Length: 262aa    MW: 28721.6 Da    PI: 8.9574
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0003s0880.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.61.5e-392080262
                  zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                            ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s+
  SapurV1A.0003s0880.3.p 20 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRST 80
                            6899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-231969IPR003851Zinc finger, Dof-type
PfamPF027011.8E-332278IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1992478IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102662IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEEMSSNTCG RPVLERKARP QEQLNCPRCN STNTKFCYYN NYSLTQPRYF CKTCRRYWTE  60
GGSLRNVPVG GGSRKNKRST SSSAASSKLP DLNPPNLSHF SSHNPNRSGH EGQDLNLAFP  120
AMQDSQGISH YTEVAKAENN NHNQHSSYSS PYTTSSPISA LELLRSGIAS RDLNSFIPTP  180
MPDSNTLYSS GGFPLQELKP TLSFSLDGLG SRYGVQQHNG RLLFPFGEHK QLSSTAEADQ  240
NKGQGTSSTG YWNGMFGGGS W*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0003s0880.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451836.11e-163dof zinc finger protein DOF2.5 isoform X3
RefseqXP_024451838.11e-163dof zinc finger protein DOF2.5 isoform X4
RefseqXP_024451839.11e-163dof zinc finger protein DOF2.5 isoform X5
RefseqXP_024451840.11e-163dof zinc finger protein DOF2.5 isoform X5
SwissprotQ433852e-71DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A3N7ER211e-143A0A3N7ER21_POPTR; Uncharacterized protein
TrEMBLA0A3N7G3M31e-143A0A3N7G3M3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s17490.11e-144(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.44e-67Dof family protein