PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0004s0270.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 708aa    MW: 78043.8 Da    PI: 7.1651
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0004s0270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.31e-14472523155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  SapurV1A.0004s0270.1.p 472 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 523
                             57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.99E-14318437No hitNo description
PROSITE profilePS5103215.791319437IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-13319341IPR001471AP2/ERF domain
SMARTSM003801.7E-19319443IPR001471AP2/ERF domain
PRINTSPR003678.4E-5320331IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-13401438IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-8404439IPR016177DNA-binding domain
PRINTSPR003678.4E-5419439IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-17472532IPR016177DNA-binding domain
PfamPF008471.6E-9472523IPR001471AP2/ERF domain
CDDcd000185.40E-25472533No hitNo description
Gene3DG3DSA:3.30.730.106.7E-18473531IPR001471AP2/ERF domain
SMARTSM003801.1E-33473537IPR001471AP2/ERF domain
PROSITE profilePS5103218.913473531IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MKSTGDNNNG SHNNWLGFSL SPHMKMEVAS DPQHHHQYHH QNNASSAVPT SFYLSTAHFN  60
SSGIGYGVGE NDGFHSPLSV MPLKSDGSLC IMEALTRSQP EGMVSSPSPK LEDFLGGANM  120
ESHQYSSHER EAMALSLDSI YYHQNSEPET NRQHSLDLHE PYRQQDQQFS VQPHPYYSGI  180
ACQGLYQAPL EGETKGAQLA DCSSPVPQMG DDELPCFKNW VNRHYSSQSA LEQHINSSMV  240
NDGGSSCSVS AMGCGDLQSL SLSMSPGSQS SCITAPRQIS PTGTECAAIE TKKRGPAKGG  300
QKQPVHRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CKKEGQTRKG RQGWSGKANN  360
VLHFLFGSAV FLFPFPPSSV FMTLTCAIYF LLGWHMLLGI MQFSVYLGGY DMEEKAARAY  420
DLAALKYWGP STHINFPLEN YQEELEEMKN MSRQEHVAHL RRKSSGFSRG ASIYRGVTRH  480
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF NITRYDVDRI  540
MASNTLLAGE LARRNRDTES SIGAIDYNTS THNNGVLYQS SQEQPNACGE SLDQKSMSSG  600
NYRSSSFSMQ DLIGTDHSVN SSQLVVDESA KLGTLLSNPS SLVTSLSSSR EPSPDKTATP  660
MLLAKPPLAS KFVSPTTSVN PWFQAAQLRP AAIPMSHLPV FATWNDT*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0004s0270.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2759331e-178GU275933.1 Populus balsamifera isolate GAL12 haplotype B unknown gene, partial sequence.
GenBankGU2759351e-178GU275935.1 Populus balsamifera isolate STL13 haplotype B unknown gene, partial sequence.
GenBankGU2759371e-178GU275937.1 Populus balsamifera isolate HAY07 haplotype B unknown gene, partial sequence.
GenBankGU2759391e-178GU275939.1 Populus balsamifera isolate LOV02 haplotype B unknown gene, partial sequence.
GenBankGU2759411e-178GU275941.1 Populus balsamifera isolate WHR03 haplotype B unknown gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451945.10.0AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389141e-131ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-130CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2K2BHD30.0A0A2K2BHD3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-131AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]
  3. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  4. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  5. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  6. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  7. Randall RS, et al.
    AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins.
    Biol Open, 2015. 4(10): p. 1229-36
    [PMID:26340943]
  8. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  9. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  10. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  11. Han H,Krizek BA
    AINTEGUMENTA-LIKE6 can functionally replace AINTEGUMENTA but alters Arabidopsis flower development when misexpressed at high levels.
    Plant Mol. Biol., 2016. 92(4-5): p. 597-612
    [PMID:27605095]
  12. Karpinska B,Alomrani SO,Foyer CH
    Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
    Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
    [PMID:28808105]
  13. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]