PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0004s0270.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 656aa    MW: 72218.8 Da    PI: 7.0532
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0004s0270.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.7e-16318377155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  SapurV1A.0004s0270.2.p 318 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 377
                             78*******************988886678446*************************98 PP
2AP246.59.4e-15420471155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  SapurV1A.0004s0270.2.p 420 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 471
                             57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-16318387IPR016177DNA-binding domain
PfamPF008479.0E-13318377IPR001471AP2/ERF domain
CDDcd000186.70E-22318385No hitNo description
SMARTSM003802.7E-29319391IPR001471AP2/ERF domain
PROSITE profilePS5103219.203319385IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-16319386IPR001471AP2/ERF domain
PRINTSPR003678.5E-6320331IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-17420480IPR016177DNA-binding domain
PfamPF008471.4E-9420471IPR001471AP2/ERF domain
CDDcd000184.40E-25420481No hitNo description
SMARTSM003801.1E-33421485IPR001471AP2/ERF domain
PROSITE profilePS5103218.913421479IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-18421479IPR001471AP2/ERF domain
PRINTSPR003678.5E-6461481IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MKSTGDNNNG SHNNWLGFSL SPHMKMEVAS DPQHHHQYHH QNNASSAVPT SFYLSTAHFN  60
SSGIGYGVGE NDGFHSPLSV MPLKSDGSLC IMEALTRSQP EGMVSSPSPK LEDFLGGANM  120
ESHQYSSHER EAMALSLDSI YYHQNSEPET NRQHSLDLHE PYRQQDQQFS VQPHPYYSGI  180
ACQGLYQAPL EGETKGAQLA DCSSPVPQMG DDELPCFKNW VNRHYSSQSA LEQHINSSMV  240
NDGGSSCSVS AMGCGDLQSL SLSMSPGSQS SCITAPRQIS PTGTECAAIE TKKRGPAKGG  300
QKQPVHRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CKKEGQTRKG RQVYLGGYDM  360
EEKAARAYDL AALKYWGPST HINFPLENYQ EELEEMKNMS RQEHVAHLRR KSSGFSRGAS  420
IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GVNAVTNFNI  480
TRYDVDRIMA SNTLLAGELA RRNRDTESSI GAIDYNTSTH NNGVLYQSSQ EQPNACGESL  540
DQKSMSSGNY RSSSFSMQDL IGTDHSVNSS QLVVDESAKL GTLLSNPSSL VTSLSSSREP  600
SPDKTATPML LAKPPLASKF VSPTTSVNPW FQAAQLRPAA IPMSHLPVFA TWNDT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0004s0270.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2759331e-178GU275933.1 Populus balsamifera isolate GAL12 haplotype B unknown gene, partial sequence.
GenBankGU2759351e-178GU275935.1 Populus balsamifera isolate STL13 haplotype B unknown gene, partial sequence.
GenBankGU2759371e-178GU275937.1 Populus balsamifera isolate HAY07 haplotype B unknown gene, partial sequence.
GenBankGU2759391e-178GU275939.1 Populus balsamifera isolate LOV02 haplotype B unknown gene, partial sequence.
GenBankGU2759411e-178GU275941.1 Populus balsamifera isolate WHR03 haplotype B unknown gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451945.10.0AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A2K2BHD30.0A0A2K2BHD3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-142AP2 family protein