PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0004s0630.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 289aa    MW: 31374.5 Da    PI: 6.5664
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0004s0630.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.14.3e-17199235135
                    GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C++Cgt +  Tp++Rrgp+g+++LCnaCGl+++ +g+
  SapurV1A.0004s0630.1.p 199 CTHCGTNSksTPMMRRGPSGPRSLCNACGLFWANRGT 235
                             *******99************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.37369104IPR010399Tify domain
SMARTSM009792.9E-1269104IPR010399Tify domain
PfamPF062001.3E-1272103IPR010399Tify domain
PROSITE profilePS5101712.59131173IPR010402CCT domain
PfamPF062036.1E-16131173IPR010402CCT domain
SuperFamilySSF577163.28E-12192244No hitNo description
SMARTSM004019.3E-14193246IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.512193243IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.0E-15197239IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.52E-16198245No hitNo description
PfamPF003209.5E-15199235IPR000679Zinc finger, GATA-type
PROSITE patternPS003440199226IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MYTHSQPVNV HNQIASPGVD DDGAPADPID HHHHIHYEDG TPTVVVDDVS PDSVYVTAGV  60
AASELGIQPS DGSSQLTLTF RGQVYVFDSV TPDKVQAVLL LLGGCEFTPG LEMTPQNQRL  120
EYPPRCTQPQ RAASLSRFRQ KRKERCFDKK VRYSVRQEVA LRMQRNKGQF TSAKKSEGGY  180
GWDGGQDSKQ DDIQHETSCT HCGTNSKSTP MMRRGPSGPR SLCNACGLFW ANRGTLRDHS  240
KKTPDHSVAP IDQGGAEVND SDSGTAIDTH NNPASYANGG DTALITDH*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0004s0630.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2771451e-121GU277145.1 Populus balsamifera isolate HAY07 haplotype B GATA type zinc finger protein ZIM gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302364.10.0GATA transcription factor 25 isoform X1
SwissprotQ9LRH63e-87GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A3Q9EET80.0A0A3Q9EET8_POPTO; GATA-type zinc finger protein with TIFY domain
STRINGPOPTR_0002s11150.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-88GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]