PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0004s0640.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 288aa    MW: 31320.2 Da    PI: 6.8791
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0004s0640.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.71e-15214250135
                    GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C +Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  SapurV1A.0004s0640.2.p 214 CKHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 250
                             *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.3E-774109IPR010399Tify domain
PROSITE profilePS5132012.79474109IPR010399Tify domain
PfamPF062002.9E-1077108IPR010399Tify domain
PfamPF062037.3E-15142183IPR010402CCT domain
PROSITE profilePS5101712.65142184IPR010402CCT domain
SMARTSM004012.7E-9208261IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.18E-11212258No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14212255IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.28E-13213257No hitNo description
PfamPF003201.3E-13214250IPR000679Zinc finger, GATA-type
PROSITE patternPS003440214241IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAAANPQPLQ SRPYKDNRTC GPIQIEDDVD EEYEEGDGMD DLEEAAAVAQ VNSGVSVAEH  60
HRGVGVGGGG GVVITSRTSE LTLSFEGEVY VFPAVTPEKV QAVLLLLGGR DIPTAVPTIE  120
VQYDQNNRGV GDTPKRSNLS RRIASLVRFR EKRKERCFDK KIRYTVRKEV AQRMHRKNGQ  180
FASLKENPGG SSWDSSQSCV QDGTPCSETV VRRCKHCGVS ENNTPAMRRG PAGPRTLCNA  240
CGLMWANKGT LRDLSKGGRN LPVDQMEPET PIDVKPSIME GEFSGNC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0004s0640.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017000.11e-180PREDICTED: GATA transcription factor 24-like isoform X1
RefseqXP_011017001.11e-180PREDICTED: GATA transcription factor 24-like isoform X1
SwissprotQ8H1G06e-72GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A3N7EIA11e-177A0A3N7EIA1_POPTR; Uncharacterized protein
TrEMBLB9GN851e-176B9GN85_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11140.11e-177(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-75ZIM-like 1