PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0004s1200.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 243aa    MW: 26478 Da    PI: 8.4965
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0004s1200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-144895254
                            HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            +++h+e ErrRR+riN  +++Lr+llP++      K +Ka+ L ++v+++++L
  SapurV1A.0004s1200.1.p 48 CKSHKETERRRRQRINAHLSTLRTLLPSP-----AKTDKASLLAQVVHHVRDL 95
                            789*************************8.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.00E-124596No hitNo description
PROSITE profilePS5088815.2314695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-124895IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1349101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1250100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-952103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.9E-4141203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MHPFQSFCYL NQDGHVPEPS LVNMMDGGES NLSSASKTKA IISTESSCKS HKETERRRRQ  60
RINAHLSTLR TLLPSPAKTD KASLLAQVVH HVRDLKMKAA GAARQYSNDC SSGLEPEENW  120
PYPGEVDEAT LSCCGHEEKM IKVSVCCEDR PGLNMDLTQA IKSVRARAVR AEMMTVAGRT  180
KTVVVMRWDS GSGGEEDVGI LKRALNAVVE NRAPGSGSGQ VVQGNKRARV FGLVSDVDRD  240
RI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0004s1200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016920.11e-164PREDICTED: transcription factor bHLH30-like
TrEMBLA0A2K2BGR81e-148A0A2K2BGR8_POPTR; Uncharacterized protein
STRINGPOPTR_0002s10540.11e-110(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.13e-31bHLH family protein