PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0005s0310.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Nin-like
Protein Properties Length: 498aa    MW: 56083.1 Da    PI: 4.6664
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0005s0310.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK94.76.5e-30184235152
                  RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                             aek+isl++l+kyFs+++kdAAk++gvc+T+LKriCRqyGI+RWP+Rkik++
  SapurV1A.0005s0310.1.p 184 AEKTISLQVLRKYFSGSLKDAAKSIGVCPTTLKRICRQYGINRWPSRKIKKV 235
                             589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.529169255IPR003035RWP-RK domain
PfamPF020428.5E-25187235IPR003035RWP-RK domain
SuperFamilySSF542773.36E-22388484No hitNo description
Gene3DG3DSA:3.10.20.2401.7E-19397478No hitNo description
PROSITE profilePS5174519.234398481IPR000270PB1 domain
SMARTSM006661.0E-19398481IPR000270PB1 domain
CDDcd064071.03E-33399478No hitNo description
PfamPF005647.4E-13399478IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MDSNFTDEFM VQGYWCERAD GANFFESEPS ISSVVDDPSP YLSWMMGPGH LSVDTNHLAY  60
QEEAENSLEN PPPVYSETEE HVIETITTPV HSESSQPEST EMVPEFCESW ECLKQEPEEE  120
ELFRETTEWD NNDLDLFQDQ EFSEFGKLQQ NPEHCTVESG QDSYFPWSNL IGSRKKSRMS  180
HTKAEKTISL QVLRKYFSGS LKDAAKSIGV CPTTLKRICR QYGINRWPSR KIKKVNHSLR  240
KLQVVVDSVM GAQGLIEVDS FYTAFPELSS PNYSGHNPFS SFKITDYSKE SNPKPESHLL  300
STEGTGDSKS QSSLSSQNSG LSICHGQKQL TSTINGSSTV EDPVEALKRT CSKSEIHPLN  360
QEEFTRAKSH ETSVKNQDLV TPAHLPISNS QALQDGGAFR VKATFGDENI RFSLHPNWGF  420
SDLQREIAKR FDIYDFSRIG LKYLDNEQEA VLLTCDADLE ECKDLLGFSQ SRTIKITLYL  480
VSTPMLGSSF SSSRDFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0005s0310.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0562683e-44KX056268.1 Citrus trifoliata transcription factor NLP2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298777.30.0protein NLP1
RefseqXP_024452202.10.0protein NLP1
TrEMBLA0A2K2C5N60.0A0A2K2C5N6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s30040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2822633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.15e-89Nin-like family protein