PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0005s0440.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 251aa    MW: 26524.6 Da    PI: 8.7932
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0005s0440.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002879101123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ykC+ C+k F++   L  H  +H
  SapurV1A.0005s0440.1.p  79 YKCTVCNKAFPSYQALGGHKASH 101
                             9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.94E-1079153No hitNo description
SMARTSM003550.006279101IPR015880Zinc finger, C2H2-like
PfamPF139127.0E-1479103IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.26379106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
PfamPF139122.2E-13130155IPR007087Zinc finger, C2H2
SMARTSM003550.18131153IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328131153IPR007087Zinc finger, C2H2
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MALEALNSPT TASPLNYEET WIKRKRSKRS RSESPSTEEE YLALCLIMLA RGGSTISTAK  60
KTAHASPAPP QPPALDLSYK CTVCNKAFPS YQALGGHKAS HRKSSSSEST IDTAAENPSN  120
STTTTTNGRT HECSICHKTF PTGQALGGHK RCHYEGTIGG SNSSSTGAAI TTSDGGAVKV  180
GGVSQSKSQR SGGGFEFDLN LPALPEFESP RIGQQALYGD QEVESPLPGK KPRLMFSLKQ  240
EKMDVGSSQI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0005s0440.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1453171e-146EF145317.1 Populus trichocarpa clone WS01123_D03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458091.11e-135zinc finger protein ZAT10
TrEMBLA0A2K2C5R11e-133A0A2K2C5R1_POPTR; Uncharacterized protein
STRINGPOPTR_0001s30260.11e-133(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-38salt tolerance zinc finger