PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0005s0700.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

HB-PHD

Protein Properties

Length: 905aa MW: 99505.4 Da PI: 4.868

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0005s0700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36.5	8.1e-12	813	855	10	52
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++ L ++F++n+yp++++++ LA++lg+t +qV WF N R SapurV1A.0005s0700.1.p 813 AVTQKLYSFFKENQYPDQAAKTSLAEELGITFEQVNKWFMNAR 855 56899************************************99 PP
2	PHD	39.2	1.6e-13	424	479	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++++lCdg C++ fH+ Cl ++l +ee+p g wlC+ C++k SapurV1A.0005s0700.1.p 424 FCAKCGSkdWTADNDIILCDGaCDRGFHQFCLVPPLLREEIPPGdeGWLCPGCDCK 479 699*988788****66****************9999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	8.2E-14	414	482	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	8.9E-13	420	479	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.887	422	479	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	3.08E-26	424	476	No hit	No description
Pfam	PF00628	3.5E-11	424	479	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	2.5E-9	424	477	IPR001965	Zinc finger, PHD-type
PROSITE pattern	PS01359	0	425	476	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	6.2E-13	795	855	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.88E-11	797	858	IPR009057	Homeodomain-like
CDD	cd00086	3.12E-11	800	855	No hit	No description
PROSITE profile	PS50071	11.936	801	861	IPR001356	Homeobox domain
SMART	SM00389	2.0E-10	803	865	IPR001356	Homeobox domain
Pfam	PF00046	2.5E-9	813	855	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 905 aa Download sequence Send to blast
MSKAEHMGIS PSKVSSHTKT YSCPTQTTLE NTHESSVEYK LGGYSEDRHK LECEIIQAEA 60 EDSRATVLHS GSGETEHPST DDVTKSSLLD LDPPPEDVRT VPFDNCAGPM STDMDQKLKP 120 GAPSVNTACE HSESSKAIDS SILLDESRNS SKKLSSCIAN ETSQASLEDI ANDSCAEEAG 180 LSLVEASISE LIYESSNSQQ TTSGQTLEFV TKSCPIKHID LPPGDDISIP ANEQIRPSHD 240 NESKHSDCHL EKLTGLVIGV TNQGRPSVKR TLKLSRKKYT SSSRKSDRVL RSKSQEKPKA 300 PELSNNSTNG NSTDEKKGKR KKKRRGKSIV ADEYSRIRAR LRYLLNRMSY ERSLITAYSG 360 EGWKGLSLEK LKPEKELQRA TSEIIRHKVK IRDLFQHIDS LCGEGRFPAS LFDSEGQIDS 420 EDIFCAKCGS KDWTADNDII LCDGACDRGF HQFCLVPPLL REEIPPGDEG WLCPGCDCKV 480 DCIELLNDSQ GTNISISDSW ENVFPEAAAA VSGQKLDYNF GLSSDDSDDN DYDPDGPDID 540 EKSQEESSSD ESDFSSASEE FEAPPDDKQY LGLPSDDSED DDYDPDAPVL EEKLKQESSS 600 SDFTSDSEDL AAILNGDGLS LGDEYLMPIK PHDDSNGRRL ISGGKKNRSL NSNLLSMLEP 660 DSRQDKSAVI SGKRNIERLD YKKLYDVSAS DLIAYESGFL ICGLGAFETY GNISTSSDDD 720 YNVTVAPRKR RKNTGDVAMV IANGDASVTG NGMNNKNMNH ELKKNEHTSE RISQKSSFQD 780 TTVSPAKTHV GDICSGSSSK RARPSPYKKL GEAVTQKLYS FFKENQYPDQ AAKTSLAEEL 840 GITFEQVNKW FMNARWSFNH SSPEGTSKAE SASGKGSCDG HLRDSESKNQ KRNKQKTSTP 900 KSRR*

Sequence ? help Back to Top

Protein Sequence Length: 905 aa Download sequence Send to blast

MSKAEHMGIS PSKVSSHTKT YSCPTQTTLE NTHESSVEYK LGGYSEDRHK LECEIIQAEA  60
EDSRATVLHS GSGETEHPST DDVTKSSLLD LDPPPEDVRT VPFDNCAGPM STDMDQKLKP  120
GAPSVNTACE HSESSKAIDS SILLDESRNS SKKLSSCIAN ETSQASLEDI ANDSCAEEAG  180
LSLVEASISE LIYESSNSQQ TTSGQTLEFV TKSCPIKHID LPPGDDISIP ANEQIRPSHD  240
NESKHSDCHL EKLTGLVIGV TNQGRPSVKR TLKLSRKKYT SSSRKSDRVL RSKSQEKPKA  300
PELSNNSTNG NSTDEKKGKR KKKRRGKSIV ADEYSRIRAR LRYLLNRMSY ERSLITAYSG  360
EGWKGLSLEK LKPEKELQRA TSEIIRHKVK IRDLFQHIDS LCGEGRFPAS LFDSEGQIDS  420
EDIFCAKCGS KDWTADNDII LCDGACDRGF HQFCLVPPLL REEIPPGDEG WLCPGCDCKV  480
DCIELLNDSQ GTNISISDSW ENVFPEAAAA VSGQKLDYNF GLSSDDSDDN DYDPDGPDID  540
EKSQEESSSD ESDFSSASEE FEAPPDDKQY LGLPSDDSED DDYDPDAPVL EEKLKQESSS  600
SDFTSDSEDL AAILNGDGLS LGDEYLMPIK PHDDSNGRRL ISGGKKNRSL NSNLLSMLEP  660
DSRQDKSAVI SGKRNIERLD YKKLYDVSAS DLIAYESGFL ICGLGAFETY GNISTSSDDD  720
YNVTVAPRKR RKNTGDVAMV IANGDASVTG NGMNNKNMNH ELKKNEHTSE RISQKSSFQD  780
TTVSPAKTHV GDICSGSSSK RARPSPYKKL GEAVTQKLYS FFKENQYPDQ AAKTSLAEEL  840
GITFEQVNKW FMNARWSFNH SSPEGTSKAE SASGKGSCDG HLRDSESKNQ KRNKQKTSTP  900
KSRR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	315	323	KKGKRKKKR
2	318	324	KRKKKRR
3	320	324	KKKRR
4	321	326	KKRRGK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0005s0700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002300247.3	0.0	homeobox protein HAT3.1
Refseq	XP_024444572.1	0.0	homeobox protein HAT3.1
Refseq	XP_024444577.1	0.0	homeobox protein HAT3.1
TrEMBL	A0A2K2C5U3	0.0	A0A2K2C5U3_POPTR; Uncharacterized protein
STRING	POPTR_0001s30570.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8437	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-86	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Link Out ? help Back to Top
Phytozome	SapurV1A.0005s0700.1.p