PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0006s0520.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

ZF-HD

Protein Properties

Length: 294aa MW: 32671.5 Da PI: 7.948

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0006s0520.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	95.7	3.9e-30	73	128	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY eCl NhAas+Gg+++DGCgEfmp geeg+ +alkCaAC+CHRnFHRre + SapurV1A.0006s0520.1.p 73 STRYLECLSNHAASVGGNVFDGCGEFMPG-GEEGSLEALKCAACECHRNFHRRELDG 128 679***********************9.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-21	73	127	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.7E-27	74	126	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.1E-27	75	125	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.397	76	125	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.89E-18	211	278	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-29	212	280	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.1E-28	221	278	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MEIRGPENDI RTPVPSSYSH QSSGLERRKD GNHNGSSVLT YTQTLDHPRQ PSRSPNPDRL 60 AIISSGSKSK TASTRYLECL SNHAASVGGN VFDGCGEFMP GGEEGSLEAL KCAACECHRN 120 FHRRELDGEI QFSPGSRSTT MVHSLQLVPP LPSPTVLHHH HHHQRYSMGL HTSPNTANMV 180 QPMSVVFGGT SGGTESSSEE LNPFQSNAEG VPPPPSYVMS KKRHRTKFTP EQKDKMVEFA 240 EKVGWRINKQ EEEEVEKFCA EVGVRRQVFK VWMHNNKNLK KLQPQQVPLD ENP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-23	220	278	16	74	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269\|PubMed:16428600, ECO:0000269\|PubMed:21059647, ECO:0000269\|PubMed:21779177}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0006s0520.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269\|PubMed:21779177}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028851.1	0.0	PREDICTED: zinc-finger homeodomain protein 5-like
Swissprot	Q9FRL5	5e-63	ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBL	B9GRN0	0.0	B9GRN0_POPTR; Uncharacterized protein
STRING	POPTR_0002s03660.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	2e-48	homeobox protein 31

Link Out ? help Back to Top
Phytozome	SapurV1A.0006s0520.1.p