PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0006s0860.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

ERF

Protein Properties

Length: 143aa MW: 16189.6 Da PI: 7.9644

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0006s0860.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.5	8.2e-19	21	71	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+G+r+++ +g+++AeIrdp+ ng +r +lg+f+t+eeAa+a+++a+ +++g+ SapurV1A.0006s0860.1.p 21 YRGIRRRP-WGKFAAEIRDPTRNG--ARRWLGTFDTEEEAARAYDRAAFAFRGH 71 9*****.******98887..***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.63E-23	20	79	IPR016177	DNA-binding domain
PROSITE profile	PS51032	24.671	20	78	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-35	20	84	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.0E-30	20	80	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-10	21	32	IPR001471	AP2/ERF domain
Pfam	PF00847	6.5E-13	21	71	IPR001471	AP2/ERF domain
CDD	cd00018	4.41E-29	21	79	No hit	No description
PRINTS	PR00367	2.3E-10	44	60	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
METHRGEKSS KKQGKGRENA YRGIRRRPWG KFAAEIRDPT RNGARRWLGT FDTEEEAARA 60 YDRAAFAFRG HLAILNFPNE YHHQDPNFTK SSASSSSFST ENPSSYGHEA SSTGGQEVIE 120 FEYLDNKLLE ELLGTHDHSR QL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-28	21	128	15	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	10	27	KKQGKGRENAYRGIRRRP

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0006s0860.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028794.1	2e-78	PREDICTED: ethylene-responsive transcription factor ERF098-like
Swissprot	Q9LTC5	5e-44	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	B9H8L0	6e-77	B9H8L0_POPTR; Uncharacterized protein
STRING	POPTR_0005s24450.1	1e-77	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	4e-34	ERF family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0006s0860.1.p

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]