PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0007s0250.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 259aa    MW: 29270.3 Da    PI: 7.4983
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0007s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002898120123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++C k F ++  L  H++ H
  SapurV1A.0007s0250.1.p  98 FECQYCFKEFANSQALGGHQNAH 120
                             89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.1E-494124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.56E-695125No hitNo description
PROSITE profilePS5015711.2498125IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEKEGSNMFS SVLDGDQNGH SAHESCTVEK KLIKLFGFEL NPCKNSKSCI KRCVEGDHES  60
VNSSNSTVVS SERDQKPVKE KSSSSGHHLG PADDHKKFEC QYCFKEFANS QALGGHQNAH  120
KKERLKKKRL QIQARKASLS CYLQPYQNNL SYSSQYETSA TPWFFDPSCS AAPDQFTLYE  180
ESQISFNPYE DSHFNDSQIS NWHAVPAQVI PFEQDSRYKF TSTRDDQRSR DYKPSPLLGS  240
KKNCKSVDLQ LDLSLQSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0007s0250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006378183.11e-148zinc finger protein 5
TrEMBLU5FXW81e-147U5FXW8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s04580.11e-147(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.13e-18zinc finger protein 5