PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0007s0550.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 224aa    MW: 25717.2 Da    PI: 7.4191
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0007s0550.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.7e-0778127155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             r+  h + Er RR+r ++++  L +llP       +K +K++i ++A + I++L+
  SapurV1A.0007s0550.1.p  78 RCNRHMMSERLRRERERNGYLALHSLLPLG-----TKKDKSSIIQMAAKRIQELE 127
                             577899**********************97.....7****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-1174143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.07177126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-578127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-681146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-483132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDGFFQDEWQ GDGFWYDIDP VNRSAFVPYL RRPEAGSEIR EESSSRGGRP TNMNKRMVEF  60
MRRSLSVDIE TQKPDSNRCN RHMMSERLRR ERERNGYLAL HSLLPLGTKK DKSSIIQMAA  120
KRIQELETYK RIMVRRNGEI EERLTESGVL NVESTKVRIE VANPSSGMDP MVDIIKCLKS  180
LGAEIRSVQS QISDQQLTAV MDIETEIEAA EIENAVKRTL ARY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0007s0550.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465178.11e-116transcription factor bHLH92 isoform X2
TrEMBLB9HUD71e-114B9HUD7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s08760.11e-115(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125722734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.13e-32bHLH family protein