PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0007s0800.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 188aa    MW: 21082.2 Da    PI: 6.7804
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0007s0800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000153557123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C+ C++ F++   L  H++ H
  SapurV1A.0007s0800.1.p 35 YECSFCKRGFTNAQALGGHMNIH 57
                            99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.91E-73361No hitNo description
Gene3DG3DSA:3.30.160.606.9E-53359IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5313562IPR007087Zinc finger, C2H2
SMARTSM003550.0093557IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MESAKQESLE ASSNEENRVR EDLSSRTTIS VKRSYECSFC KRGFTNAQAL GGHMNIHRKD  60
RANRTKDKQL ASFSSVSSKA SEEIKNPRCM VPNSSEPTKF YLVSEAQGNY GMFFQQQGSS  120
PSEPHSYKHG SHDCLVPRSQ SLSMSDELWD TNIGLQIGCS NIQDNRGNRR VSDDDEIDLE  180
LRLGHDR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0007s0800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030532.11e-107PREDICTED: transcriptional regulator SUPERMAN
TrEMBLB9HUB71e-101B9HUB7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s08520.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.14e-16C2H2 family protein