PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0008s0120.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YC
Protein Properties Length: 234aa    MW: 25947 Da    PI: 7.5095
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0008s0120.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC57.53.1e-186861898
                   NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                            ++++P  rikki+++dedv +i+  +P l+ska elf+ +l  r++  + +   +tl+   ++++v+  ++fdfl +iv +
  SapurV1A.0008s0120.4.p  6 DTRFPAVRIKKIMQTDEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTLNSFHLKQCVQTFNVFDFLREIVSK 86
                            5789*************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.8E-25272IPR009072Histone-fold
PfamPF008084.1E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.19E-191888IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MKKKLDTRFP AVRIKKIMQT DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLKRGAK  60
TLNSFHLKQC VQTFNVFDFL REIVSKVPDL GGPDAAGDER GVSKRRKVAD DEDNDSDEEC  120
SRNRTNDTIQ TSSSGRGRGR GRGRGRGRGT RSMEKETAAQ HGKFEDDPGI GHQNDKHGPK  180
LGRLDMDYEP KDSKDNIPSG RNLQAPVRDF DLNMDLDENG ETQPVLASVP TSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A6e-24272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137147RGRGRGRGRGR
2139148RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0008s0120.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035029.11e-124PREDICTED: uncharacterized protein LOC105132976 isoform X1
RefseqXP_011042017.11e-124PREDICTED: dr1-associated corepressor-like isoform X2
TrEMBLA0A2K2C2081e-122A0A2K2C208_POPTR; Uncharacterized protein
STRINGPOPTR_0001s23260.11e-109(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.16e-56NF-YC family protein