PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0008s0120.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YC
Protein Properties Length: 217aa    MW: 23892.4 Da    PI: 5.2105
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0008s0120.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC38.52.5e-121693098
                   NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                            +++dedv +i+  +P l+ska elf+ +l  r++  + +   +tl+   ++++v+  ++fdfl +iv +
  SapurV1A.0008s0120.5.p  1 MQTDEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTLNSFHLKQCVQTFNVFDFLREIVSK 69
                            889**************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.1E-19171IPR009072Histone-fold
PfamPF008082.7E-12154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.1E-18168IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MQTDEDVGKI AMAVPLLVSK ALELFLQDLC DRTYEITLKR GAKTLNSFHL KQCVQTFNVF  60
DFLREIVSKV PDLGGPDAAG DERGVSKRRK VADDEDNDSD EECSRNRTND TIQTSSSGRG  120
RGRGRGRGRG RGTRSMEKET AAQHGKFEDD PGIGHQNDKH GPKLGRLDMD YEPKDSKDNI  180
PSGRNLQAPV RDFDLNMDLD ENGETQPVLA SVPTSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A6e-161552175Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120130RGRGRGRGRGR
2122131RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0008s0120.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042015.11e-112PREDICTED: dr1-associated corepressor-like isoform X1
RefseqXP_011042017.11e-112PREDICTED: dr1-associated corepressor-like isoform X2
RefseqXP_011042018.11e-113PREDICTED: dr1-associated corepressor-like isoform X3
TrEMBLA0A2K2C2081e-109A0A2K2C208_POPTR; Uncharacterized protein
STRINGPOPTR_0001s23260.11e-109(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.11e-44NF-YC family protein