PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0008s0390.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 644aa    MW: 71319 Da    PI: 9.6915
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0008s0390.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-091447236
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
         Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                            ++W t+E++ll+ avk++G ++W+++a ++  ++t
  SapurV1A.0008s0390.1.p 14 LSWGTWEELLLASAVKRHGFKNWDSVALELR-TKT 47
                            58***************************99.665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00241269IPR001005SANT/Myb domain
CDDcd001671.32E-51548No hitNo description
PfamPF002494.2E-81547IPR001005SANT/Myb domain
SMARTSM002979.2E-15280385IPR001487Bromodomain
SuperFamilySSF473708.24E-16287388IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.2E-13290385IPR001487Bromodomain
PROSITE profilePS5001411.215295366IPR001487Bromodomain
PfamPF004391.4E-9296366IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MASQDEEIHP ENQLSWGTWE ELLLASAVKR HGFKNWDSVA LELRTKTCLP HLLTTAQICQ  60
QKYLDLNRRF ITNNLHHSHT PEEDYPDEEQ NNVDTDIIDN NFVNVPWFEE LRKLRVAELK  120
QEVQRYDVSI LTLRLKVKKL EEERERSFQG DSNTEKPDLK PDRLENEEDK PGTVSGEESD  180
RENRSVNESN STASGGGEDA VPKLEEAEPV QGGSGGPDPV VSGSSRKALE EGAGGGGEEE  240
SCELGDSVTQ RSSESLSSGR KRKGSEGKEE VSVTGGEETV AVSSEPFIGL LEVIGAHKNA  300
SLFESLLQSQ EMCAYKDMIR QHMDLEAIQT KLEQGSYSPS ILLFFRDLLL LFNNAFVFFP  360
KHSVESLIAH KIRSLVMNEM RKNTKRSDST PVPENIPSQP KRELDRSDSL LAKHKSSIPS  420
IVCRKRSSIS AKPSSSSLGQ KIEQQQQQQI NENKPVNDLK PPVNDLKPPT AEQGLLKMKS  480
EEKPVTGARS TRRGKNLAKV STSLSKKQNT SPDTKAAAPE KSETSKPEKK KNEALPMEKK  540
KSAVDFLKRI KNNSPAETPK ITGRGASNGG ERKMEGSGGK GKERVLKKSS DKKQGKQESS  600
PSKKNVGRPS KKAAEVSSRV SGKRGRESGG KEVAKRPRKR SRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1634642KRPRKRSRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0008s0390.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002321.10.0PREDICTED: muscle M-line assembly protein unc-89-like isoform X2
TrEMBLU5GV420.0U5GV42_POPTR; Uncharacterized protein
STRINGPOPTR_0001s23640.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-40DNA-binding bromodomain-containing protein