PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0008s0740.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

M-type_MADS

Protein Properties

Length: 68aa MW: 7816.08 Da PI: 10.9156

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0008s0740.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90	1.2e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienks vtfskR+ng++KKA ELSvLCd+++a++ifss+gklye+ss SapurV1A.0008s0740.1.p 10 RIENKSSHLVTFSKRQNGLFKKARELSVLCDVQIALLIFSSRGKLYEFSS 59 8***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.22E-26	1	61	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.245	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.2E-33	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.8E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 68 aa Download sequence Send to blast
MDRKKVELNR IENKSSHLVT FSKRQNGLFK KARELSVLCD VQIALLIFSS RGKLYEFSSV 60 DRNLTRT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	3e-17	1	61	1	61	MEF2C
5f28_B	3e-17	1	61	1	61	MEF2C
5f28_C	3e-17	1	61	1	61	MEF2C
5f28_D	3e-17	1	61	1	61	MEF2C
6byy_A	3e-17	1	61	1	61	MEF2 CHIMERA
6byy_B	3e-17	1	61	1	61	MEF2 CHIMERA
6byy_C	3e-17	1	61	1	61	MEF2 CHIMERA
6byy_D	3e-17	1	61	1	61	MEF2 CHIMERA
6bz1_A	3e-17	1	61	1	61	MEF2 CHIMERA
6bz1_B	3e-17	1	61	1	61	MEF2 CHIMERA
6bz1_C	3e-17	1	61	1	61	MEF2 CHIMERA
6bz1_D	3e-17	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:7632923, PubMed:25183521). Plays an important role in the determination of flower meristem identity. Involved in the specification of sepal identity. Contributes to the development of petals, stamens and carpels (PubMed:15530395). {ECO:0000269\|PubMed:15530395, ECO:0000269\|PubMed:25183521, ECO:0000269\|PubMed:7632923}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0008s0740.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011020776.1	9e-28	PREDICTED: MADS-box protein FLOWERING LOCUS C-like isoform X1
Refseq	XP_011020777.1	8e-28	PREDICTED: MADS-box protein FLOWERING LOCUS C-like isoform X2
Refseq	XP_011020778.1	6e-28	PREDICTED: MADS-box protein FLOWERING LOCUS C-like isoform X3
Refseq	XP_011020779.1	7e-28	PREDICTED: MADS-box protein FLOWERING LOCUS C-like isoform X4
Refseq	XP_011020780.1	7e-28	PREDICTED: MADS-box protein FLOWERING LOCUS C-like isoform X5
Refseq	XP_011020781.1	5e-28	PREDICTED: agamous-like MADS-box protein AGL6 isoform X6
Swissprot	P29383	1e-23	AGL3_ARATH; Agamous-like MADS-box protein AGL3
TrEMBL	A0A3N7EWE5	2e-27	A0A3N7EWE5_POPTR; Uncharacterized protein
STRING	POPTR_0003s16840.1	3e-28	(Populus trichocarpa)
STRING	POPTR_0003s16870.1	3e-28	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	2e-26	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0008s0740.1.p

Publications ? help Back to Top
Maejima K, et al. Degradation of class E MADS-domain transcription factors in Arabidopsis by a phytoplasmal effector, phyllogen. Plant Signal Behav, 2015. 10(8): p. e1042635 [PMID:26179462]