PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0008s0950.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 215aa    MW: 24414.7 Da    PI: 10.7362
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0008s0950.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.3e-184693148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+ Ed+llv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  SapurV1A.0008s0950.1.p 46 KGPWTEKEDLLLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 93
                            79********************************************97 PP
2Myb_DNA-binding54.13.5e-1799143147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg++T++E+ l +++++++G++ W++Iar ++ gRt++++k++w+++
  SapurV1A.0008s0950.1.p  99 RGKMTPQEERLVLELHAKWGNR-WSRIARNLP-GRTDNEIKNYWRTH 143
                             89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.534193IPR017930Myb domain
SuperFamilySSF466895.75E-3044140IPR009057Homeodomain-like
SMARTSM007177.8E-164595IPR001005SANT/Myb domain
PfamPF002498.8E-174693IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2147100IPR009057Homeodomain-like
CDDcd001673.27E-114893No hitNo description
PROSITE profilePS5129426.16494148IPR017930Myb domain
SMARTSM007171.7E-1698146IPR001005SANT/Myb domain
PfamPF002496.5E-1699143IPR001005SANT/Myb domain
CDDcd001671.22E-11101143No hitNo description
Gene3DG3DSA:1.10.10.608.8E-24101147IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
HPAYINEWSS ARSPQVPVIK KLELEVGETE RSKRETAKMM QDEIRKGPWT EKEDLLLVNF  60
VHLFGDRRWD FIAKVSGLNR TGKSCRLRWV NYLHPGLKRG KMTPQEERLV LELHAKWGNR  120
WSRIARNLPG RTDNEIKNYW RTHTRKKAQE RKRAMSPSLS SSNCSSSSNT TTVNSSPPPR  180
TGETSFYDTG GLEQVALAGK NGEAVQGGWA LARL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-273814850159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-273814850159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0008s0950.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346518e-43KM034651.1 Jatropha curcas clone JcMYB031 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313452.21e-101transcription factor MYB48 isoform X2
SwissprotQ9LX825e-79MYB48_ARATH; Transcription factor MYB48
TrEMBLB9HPK91e-99B9HPK9_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03240.11e-100(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-78myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]